PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009778769.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 61aa    MW: 6939.43 Da    PI: 10.9493
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009778769.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.34e-23953145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    krie+ks rqvt++kRr+g++KKA+ LS+LCd++vav++fs +g 
  XP_009778769.1  9 KRIEEKSSRQVTLCKRRKGLIKKAKQLSILCDVDVAVVVFSDRGC 53
                    79****************************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.754161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-23155IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-20323IPR002100Transcription factor, MADS-box
PfamPF003194.6E-221054IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MGRKKVEMKR IEEKSSRQVT LCKRRKGLIK KAKQLSILCD VDVAVVVFSD RGCVLFVKSL  60
S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778769.15e-35PREDICTED: MADS-box transcription factor 21-like isoform X2
SwissprotQ8RU316e-20MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBLQ6UGR28e-25Q6UGR2_PETHY; MADS-box protein 17 (Fragment)
STRINGSolyc05g015730.1.11e-22(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.21e-20AGAMOUS-like 31